Lab
Class Organism

The organism identified as being present within a specimen sample. "Organism" as used here is not the full spectrum of possible living things, but rather is limited to a member of the following: Bacteria, Fungus, Mycobacterium, Parasite, or Virus. Note that some organisms, primarily parasites, may undergo different stages over their lifetime (e.g., eggs, larvae, adults), which is indicated in the optional lifeStage property. Some terminologies will pre-coordinate the organismTaxon and stage into a single code (Giardia lamblia cysts, Giardia lamblia trophozoites).

Attributes
«CS» Code lifeStage lifeStage

Stage: "A particular step, phase, or position in a developmental process." - The American Heritage Stedman's Medical Dictionary. Categorizes the life-cycle-stage of the organism observed in a sample. Possible values include: Adults, Cysts, Eggs, Filariform Larvae, Gametes, Larvae, Microfilaria, Rhabditiform Larvae, Schizonts, Trophozoites. This property is used primarily for parasites. Parasite: "An organism that grows, feeds, and is sheltered on or in a different organism while contributing nothing to the survival of its host." - The American Heritage Stedman's Medical Dictionary.

«CS» Code organismTaxon organismTaxon

A categorization of the organism identified, i.e., the “type� of organism. Note that this property is intended to include not only specific species of organisms (e.g., Staphylococcus aureus, SNOMED-CT code 3092008), but also more general classifications that might be found in laboratory results, such as Gram-positive Cocci (SNOMED-CT code 59206002). Note also that since this property is a coded element, it contains both a code and a display name.

String strain strain

A more precise subdivision of the value in the organism taxon, for example, the H1N1 form of Influenza. Because of the multitude of strains and the speed at which they are discovered, the organism taxon coding system may not provide such values. This property is therefore modeled as a string, rather than a code, as one might otherwise expect.
"Contains the specific strain of animal. It can also be expanded to include strain of any living organism and is not restricted to animals." - HL7 Version 2.8, PID-37.
"The body of descendants of a common ancestor, as a family or stock. A variety, especially of microorganisms." - Dictionary.com


Properties:

Alias
Classifier Behavior
Is Abstractfalse
Is Activefalse
Is Leaffalse
Keywords
NameOrganism
Name Expression
NamespaceLab
Owned Template Signature
OwnerLab
Owning Template Parameter
PackageLab
Qualified NameFHIM::Lab::Organism
Representation
Stereotype
Template Parameter
VisibilityPublic

Attribute Details

 lifeStage
Public Â«CS» Code lifeStage

Stage: "A particular step, phase, or position in a developmental process." - The American Heritage Stedman's Medical Dictionary. Categorizes the life-cycle-stage of the organism observed in a sample. Possible values include: Adults, Cysts, Eggs, Filariform Larvae, Gametes, Larvae, Microfilaria, Rhabditiform Larvae, Schizonts, Trophozoites. This property is used primarily for parasites. Parasite: "An organism that grows, feeds, and is sheltered on or in a different organism while contributing nothing to the survival of its host." - The American Heritage Stedman's Medical Dictionary.

Constraints:
Properties:

AggregationNone
Alias
Association
Association End
ClassOrganism
Datatype
Default
Default Value
Is Compositefalse
Is Derivedfalse
Is Derived Unionfalse
Is Leaffalse
Is Orderedfalse
Is Read Onlyfalse
Is Staticfalse
Is Uniquetrue
Keywords
Lower0
Lower Value(0)
Multiplicity0..1
NamelifeStage
Name Expression
NamespaceOrganism
Opposite
OwnerOrganism
Owning Association
Owning Template Parameter
Qualified NameFHIM::Lab::Organism::lifeStage
Stereotype
Template Parameter
Type«CS» Code
Upper1
Upper Value(1)
VisibilityPublic


 organismTaxon
Public Â«CS» Code organismTaxon

A categorization of the organism identified, i.e., the “type� of organism. Note that this property is intended to include not only specific species of organisms (e.g., Staphylococcus aureus, SNOMED-CT code 3092008), but also more general classifications that might be found in laboratory results, such as Gram-positive Cocci (SNOMED-CT code 59206002). Note also that since this property is a coded element, it contains both a code and a display name.

Constraints:
Properties:

AggregationNone
Alias
Association
Association End
ClassOrganism
Terminologies[
FHIM_Defined_Content Microorganism taxon 2.16.840.1.113883.3.2074.1.1.21
]
Datatype
Default
Default Value
Is Compositefalse
Is Derivedfalse
Is Derived Unionfalse
Is Leaffalse
Is Orderedfalse
Is Read Onlyfalse
Is Staticfalse
Is Uniquetrue
Keywords
Lower1
Lower Value(1)
Multiplicity1
NameorganismTaxon
Name Expression
NamespaceOrganism
Opposite
OwnerOrganism
Owning Association
Owning Template Parameter
Qualified NameFHIM::Lab::Organism::organismTaxon
StereotypeValueSetConstraints
Template Parameter
Type«CS» Code
Upper1
Upper Value(1)
VisibilityPublic


 strain
Public String strain

A more precise subdivision of the value in the organism taxon, for example, the H1N1 form of Influenza. Because of the multitude of strains and the speed at which they are discovered, the organism taxon coding system may not provide such values. This property is therefore modeled as a string, rather than a code, as one might otherwise expect.
"Contains the specific strain of animal. It can also be expanded to include strain of any living organism and is not restricted to animals." - HL7 Version 2.8, PID-37.
"The body of descendants of a common ancestor, as a family or stock. A variety, especially of microorganisms." - Dictionary.com

Constraints:
Properties:

AggregationNone
Alias
Association
Association End
ClassOrganism
Datatype
Default
Default Value
Is Compositefalse
Is Derivedfalse
Is Derived Unionfalse
Is Leaffalse
Is Orderedfalse
Is Read Onlyfalse
Is Staticfalse
Is Uniquetrue
Keywords
Lower0
Lower Value(0)
Multiplicity0..1
Namestrain
Name Expression
NamespaceOrganism
Opposite
OwnerOrganism
Owning Association
Owning Template Parameter
Qualified NameFHIM::Lab::Organism::strain
Stereotype
Template Parameter
TypeString
Upper1
Upper Value(1)
VisibilityPublic