| Lab UML Documentation |
Summary:AttributesProperties | Detail:Attributes |
The organism identified as being present within a specimen sample. "Organism" as used here is not the full spectrum of possible living things, but rather is limited to a member of the following: Bacteria, Fungus, Mycobacterium, Parasite, or Virus. Note that some organisms, primarily parasites, may undergo different stages over their lifetime (e.g., eggs, larvae, adults), which is indicated in the optional lifeStage property. Some terminologies will pre-coordinate the organismTaxon and stage into a single code (Giardia lamblia cysts, Giardia lamblia trophozoites).
Attributes | ||
«CS» Code | lifeStage |
Stage: "A particular step, phase, or position in a developmental process." - The American Heritage Stedman's Medical Dictionary. Categorizes the life-cycle-stage of the organism observed in a sample. Possible values include: Adults, Cysts, Eggs, Filariform Larvae, Gametes, Larvae, Microfilaria, Rhabditiform Larvae, Schizonts, Trophozoites. This property is used primarily for parasites. Parasite: "An organism that grows, feeds, and is sheltered on or in a different organism while contributing nothing to the survival of its host." - The American Heritage Stedman's Medical Dictionary. |
«CS» Code | organismTaxon |
A categorization of the organism identified, i.e., the “type� of organism. Note that this property is intended to include not only specific species of organisms (e.g., Staphylococcus aureus, SNOMED-CT code 3092008), but also more general classifications that might be found in laboratory results, such as Gram-positive Cocci (SNOMED-CT code 59206002). Note also that since this property is a coded element, it contains both a code and a display name. |
String | strain |
A more precise subdivision of the value in the organism taxon, for example, the H1N1 form of Influenza. Because of the multitude of strains and the speed at which they are discovered, the organism taxon coding system may not provide such values. This property is therefore modeled as a string, rather than a code, as one might otherwise expect."Contains the specific strain of animal. It can also be expanded to include strain of any living organism and is not restricted to animals." - HL7 Version 2.8, PID-37."The body of descendants of a common ancestor, as a family or stock. A variety, especially of microorganisms." - Dictionary.com |
Properties:
Alias | |
Classifier Behavior | |
Is Abstract | false |
Is Active | false |
Is Leaf | false |
Keywords | |
Name | Organism |
Name Expression | |
Namespace | Lab |
Owned Template Signature | |
Owner | Lab |
Owning Template Parameter | |
Package | Lab |
Qualified Name | FHIM::Lab::Organism |
Representation | |
Stereotype | |
Template Parameter | |
Visibility | Public |
Attribute Details |
Public «CS» Code lifeStage
Stage: "A particular step, phase, or position in a developmental process." - The American Heritage Stedman's Medical Dictionary. Categorizes the life-cycle-stage of the organism observed in a sample. Possible values include: Adults, Cysts, Eggs, Filariform Larvae, Gametes, Larvae, Microfilaria, Rhabditiform Larvae, Schizonts, Trophozoites. This property is used primarily for parasites. Parasite: "An organism that grows, feeds, and is sheltered on or in a different organism while contributing nothing to the survival of its host." - The American Heritage Stedman's Medical Dictionary.
Aggregation | None |
Alias | |
Association | |
Association End | |
Class | Organism |
Datatype | |
Default | |
Default Value | |
Is Composite | false |
Is Derived | false |
Is Derived Union | false |
Is Leaf | false |
Is Ordered | false |
Is Read Only | false |
Is Static | false |
Is Unique | true |
Keywords | |
Lower | 0 |
Lower Value | (0) |
Multiplicity | 0..1 |
Name | lifeStage |
Name Expression | |
Namespace | Organism |
Opposite | |
Owner | Organism |
Owning Association | |
Owning Template Parameter | |
Qualified Name | FHIM::Lab::Organism::lifeStage |
Stereotype | |
Template Parameter | |
Type | «CS» Code |
Upper | 1 |
Upper Value | (1) |
Visibility | Public |
Public «CS» Code organismTaxon
A categorization of the organism identified, i.e., the “type� of organism. Note that this property is intended to include not only specific species of organisms (e.g., Staphylococcus aureus, SNOMED-CT code 3092008), but also more general classifications that might be found in laboratory results, such as Gram-positive Cocci (SNOMED-CT code 59206002). Note also that since this property is a coded element, it contains both a code and a display name.
Aggregation | None |
Alias | |
Association | |
Association End | |
Class | Organism |
Terminologies | [ FHIM_Defined_Content Microorganism taxon 2.16.840.1.113883.3.2074.1.1.21 ] |
Datatype | |
Default | |
Default Value | |
Is Composite | false |
Is Derived | false |
Is Derived Union | false |
Is Leaf | false |
Is Ordered | false |
Is Read Only | false |
Is Static | false |
Is Unique | true |
Keywords | |
Lower | 1 |
Lower Value | (1) |
Multiplicity | 1 |
Name | organismTaxon |
Name Expression | |
Namespace | Organism |
Opposite | |
Owner | Organism |
Owning Association | |
Owning Template Parameter | |
Qualified Name | FHIM::Lab::Organism::organismTaxon |
Stereotype | ValueSetConstraints |
Template Parameter | |
Type | «CS» Code |
Upper | 1 |
Upper Value | (1) |
Visibility | Public |
Public String strain
A more precise subdivision of the value in the organism taxon, for example, the H1N1 form of Influenza. Because of the multitude of strains and the speed at which they are discovered, the organism taxon coding system may not provide such values. This property is therefore modeled as a string, rather than a code, as one might otherwise expect."Contains the specific strain of animal. It can also be expanded to include strain of any living organism and is not restricted to animals." - HL7 Version 2.8, PID-37."The body of descendants of a common ancestor, as a family or stock. A variety, especially of microorganisms." - Dictionary.com
Aggregation | None |
Alias | |
Association | |
Association End | |
Class | Organism |
Datatype | |
Default | |
Default Value | |
Is Composite | false |
Is Derived | false |
Is Derived Union | false |
Is Leaf | false |
Is Ordered | false |
Is Read Only | false |
Is Static | false |
Is Unique | true |
Keywords | |
Lower | 0 |
Lower Value | (0) |
Multiplicity | 0..1 |
Name | strain |
Name Expression | |
Namespace | Organism |
Opposite | |
Owner | Organism |
Owning Association | |
Owning Template Parameter | |
Qualified Name | FHIM::Lab::Organism::strain |
Stereotype | |
Template Parameter | |
Type | String |
Upper | 1 |
Upper Value | (1) |
Visibility | Public |
| Lab UML Documentation |
Summary:AttributesProperties | Detail:Attributes |